FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12508941
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1227933898.16448890437648No Hit
CGCTGT284540.22746929576212727No Hit
CGACGT252940.20220736511587992No Hit
CGATGC173950.1390605327821116No Hit
CGAAGT163010.13031478843812597No Hit
CGATGA136900.1094417185275716No Hit
CGTTGT136490.10911395297171839No Hit
TGATGT132960.10629197147864076No Hit
CGAGGT125960.10069597418358596No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)