FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13686571
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1345969898.34236785824586No Hit
TGACCC443010.3236822429810944No Hit
TGACAA299290.2186742026180261No Hit
TGACTA233840.1708536053332862No Hit
TTACCA199510.1457706243587236No Hit
TGATCA178760.13060977800794663No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)