FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13688085
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC277930.20304520318218364No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG259000.18921565726688575No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT226430.16542124044378742No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC209210.15284095620388097No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA207340.1514748045471664No Hit
CCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTAC193830.141604906749191No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT192630.1407282318892672No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG186300.1361037720031692No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA175830.12845478385033407No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG171500.1252914487307757No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA165980.12125874437512625No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC154610.1129522500773483No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT154500.11287188821518862No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC137840.10070071890991325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)