FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13740153
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1350393798.28083428183078No Hit
TGACCC443960.32311139475666684No Hit
TGACAA312810.2276612203663234No Hit
TGACTA239540.1743357588521758No Hit
TTACCA202550.1474146612486775No Hit
TGATCA181840.13234204888402626No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)