FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16268388
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1599967198.34822601968924No Hit
CAGCTC360750.22174907556913445No Hit
CAGATT297800.18305439973524115No Hit
CAGATA285330.17538922725472247No Hit
TAGATC260830.1603293454766385No Hit
CAGTTC213760.13139593179115225No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)