FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16307403
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1602904698.29306358590635No Hit
CAGCTC367680.22546815087601627No Hit
CAGATT304330.18662076358816912No Hit
CAGATA298960.1833277806404858No Hit
TAGATC259800.15931414707786395No Hit
CAGTTC217770.13354057663258828No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)