FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13122456
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC285810.21780221629243793No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT202280.15414797351959114No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA202160.1540565272232576No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG182850.13934129403825016No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG167430.1275904449593887No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA160810.1225456576116544No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC157340.11990133554267586No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT144350.11000227396456883No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT143970.10971269402617924No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG143630.10945359618656753No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC143380.10926308306920594No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA142460.10856199479731539No Hit
CCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTAC139250.10611580637039286No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC135230.10305235544321885No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT135080.10293804757280191No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC133490.10172638414638235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)