FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13119014
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1291411598.43815244041969No Hit
ATGTCC285860.2178974730875354No Hit
ATTTCA260200.19833807632189432No Hit
ATGTTA160350.12222717347507976No Hit
CTGTCA154610.11785184465844765No Hit
ATGTAA146690.11181480559438385No Hit
ATGACA132070.10067067540289233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)