FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15384837
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1514958298.47086452719648No Hit
GGCTCC384750.2500838975414559No Hit
GTCTAC242550.1576552289764266No Hit
GGCTAA194490.12641667896773945No Hit
AGCTAC192380.1250451987239124No Hit
GGCTAT189600.12323822475337241No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)