FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15457689
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1521870298.45392800954916No Hit
GGCTCC379980.24581941065058302No Hit
GTCTAC244350.15807666980491067No Hit
GGCTAA196270.12697240835936083No Hit
AGCTAC193010.12486342557415923No Hit
GGCTAT192270.12438469942046317No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)