FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13671547
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1342776698.21687333554864No Hit
GTGGCT504790.36922668663612096No Hit
GTGTCC214430.1568439913932198No Hit
GTGGTC201500.14738639306875806No Hit
GTTGCC197000.14409488553124236No Hit
TTGGCC137440.10052995465692362No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)