FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13696990
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1344926298.19136905261668No Hit
GTGGCT501520.36615343955131746No Hit
GTGTCC215020.15698339562195782No Hit
GTTGCC203150.14831725802530335No Hit
GTGGTC200610.14646283599535373No Hit
GTGGAC140920.10288391829153705No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)