FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13540760
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1312155096.90408810140642No Hit
GTTTTG1717651.2685033927194633No Hit
GTTTCC279630.20650982662716125No Hit
GATTCG236600.1747316989592903No Hit
GCTTCG206710.15265760562922612No Hit
GTTTAG189470.1399256762545086No Hit
GTTTCA185330.13686824077821333No Hit
GTTTCT183990.13587863605883274No Hit
GGTTCG179700.1327104239348456No Hit
GTTCCG154830.11434365574753559No Hit
TTTTCG137430.1014935646152801No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)