FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13540760
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA301180.22242473834555815No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC218450.16132772458857553No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT206970.15284961848522535No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA200890.14835947169878205No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT180120.1330205985483828No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA174320.12873723483763097No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC163280.12058407356751023No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA150400.11107205208570271No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT147380.10884174891217333No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG136950.10113907934266614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)