FastQCFastQC Report
Wed 8 May 2024
EGAF00004828748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13517239
Total Bases81.1 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1309885396.90479690416069No Hit
GTTTTG1709261.2645037940070454No Hit
GTTTCC281180.20801585294156597No Hit
GATTCG238950.17677426580975597No Hit
GCTTCG204020.1509331898326278No Hit
GTTTAG194970.14423803559291953No Hit
GTTTCA185470.1372099731313473No Hit
GTTTCT184030.13614466682138268No Hit
GGTTCG181500.1342729828184587No Hit
GTTCCG155460.11500869371326497No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)