FastQCFastQC Report
Fri 10 May 2024
EGAF00004828750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13517239
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA294320.21773677301999322No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC221260.16368727371025993No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT202650.14991966924606423No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA200000.1479592097173099No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT179210.1325788498671955No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA173810.12858395120482813No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC163390.1208752763785563No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA149600.11067348886854779No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT148680.10999287650384816No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG136220.10077501773845976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)