FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13520928
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1310548496.92740024945033No Hit
GTTTTG1696811.2549508436107344No Hit
GTTTCC273890.20256745690828323No Hit
GATTCG237950.17598644116735182No Hit
GCTTCG206430.15267443181414767No Hit
GTTTAG188160.13916204568207152No Hit
GTTTCA183620.13580428798970012No Hit
GTTTCT181510.1342437442163733No Hit
GGTTCG174960.12939940217121193No Hit
GTTCCG150530.11133111573406797No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)