FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13535844
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGC1334841798.61532830904375No Hit
TTATGC189780.140205516552939No Hit
TTAGGA183250.13538128837773247No Hit
TTAGCC166150.12274816405981037No Hit
TTAGTC162330.11992602751627457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)