FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13544110
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGC1335439798.59929519178448No Hit
TTATGC190640.1407549111754113No Hit
TTAGGA185230.13676055495709943No Hit
TTAGCC165460.12216380404471022No Hit
TTAGTC161720.11940245612299367No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)