FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15514229
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1523483898.19913061744802No Hit
GATTAG416720.2686050334824889No Hit
GATCCG410210.2644088855462943No Hit
GATCAA226050.14570495253099588No Hit
GCTCAG224620.1447832180380991No Hit
GATCAT178060.11477205860503928No Hit
GAACAG165820.10688252700150294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)