FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15494847
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1520813298.14961064152489No Hit
GATTAG416700.2689281152630936No Hit
GATCCG402780.2599444834789269No Hit
GATCAA234880.15158587884088176No Hit
GCTCAG231000.1490818205562146No Hit
GATCAT184080.1188007858354458No Hit
GAACAG172590.1113854173584289No Hit
GACCAG159000.10261475960362822No Hit
GATAAG155840.10057537192848694No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)