FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13469569
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1328850398.65574020965333No Hit
CGTCCG291320.21628012002462738No Hit
CTTACG216330.1606064752331719No Hit
CGTACT161620.11998899148146464No Hit
TGTACG147410.10943928495410656No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)