FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13459267
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1327496398.63065351181457No Hit
CGTCCG297500.22103729720199472No Hit
CTTACG217340.1614798190718707No Hit
CGTACT161820.12022943002765307No Hit
TGTACG148830.11057808720192563No Hit
CGTAAG134900.10022834081529107No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)