FastQCFastQC Report
Wed 8 May 2024
EGAF00004828778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13486385
Total Bases80.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1329912398.61147371960685No Hit
CGTCCG294330.21824232364714488No Hit
CTTACG218970.16236374684542967No Hit
CGTACT164220.12176724896997972No Hit
TGTACG149710.11100825017230341No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)