FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12650303
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCT1245467298.45354692294723No Hit
CTTCCT309250.24446054770387712No Hit
ATTCTT224620.17756096435002386No Hit
ATTCCC193680.15310305215614203No Hit
ATTTCT180630.14278709371625328No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)