FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17328537
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGG1702684098.25895861837614No Hit
GCGTGG393380.22701281706586077No Hit
GAGCGG277290.16001927918092568No Hit
GAGAGG268390.1548832425957252No Hit
GAGTGA233540.13477190832670985No Hit
GATTGG213210.12303981576748228No Hit
GAGTGC176840.10205131569964619No Hit
GTGTGG173580.10017002589428063No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)