EGAF00004828795 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828795
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17375742
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG	28781	0.16563896954731488	No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA	28156	0.16204200085383405	No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	27367	0.15750118757518383	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	25869	0.14887997301064898	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	22057	0.1269413415553707	No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC	19149	0.1102053656183431	No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA	17925	0.10316106212903023	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	17695	0.1018373776498293	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGATTT	6435	38.996582	94
CGACCGT	1720	36.076702	1
TCACCCG	8145	35.31764	3
ACCCGGC	8065	35.19767	5
CACCCGG	8720	32.449005	4
CGACCTA	2235	30.70412	4
CTTAGCG	2580	30.600582	8
GCGGGTC	9450	30.593096	2
GTCGTAA	2045	28.038054	5
ACCGTTG	2140	27.675032	3
TCGTAAG	2090	27.208551	6
GACCTAG	5365	26.718462	5
CTCGATT	6115	25.748404	48-49
ACCTAGC	5595	25.451235	6
GGTCGTA	2440	24.271803	4
TGACCTA	6175	23.748652	4
GACCGTT	2500	23.692488	2
TTAGCGG	3655	23.657524	9
CGGCCCG	12025	23.291704	8
TGACGAC	3120	23.203178	1