FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004828796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17296899
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGG1698990198.22512694327463No Hit
GCGTGG389970.2254565977404389No Hit
GAGCGG284420.16443409885205434No Hit
GAGAGG274980.15897647318169575No Hit
GAGTGA237280.13718065879901364No Hit
GATTGG215380.12451942975443171No Hit
GAGTGC186600.10788060911958842No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)