FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14430000
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGAT1420541798.44363825363826No Hit
ACTGCT410880.2847401247401247No Hit
ACTGAA279790.1938946638946639No Hit
ACTTAT213100.14767844767844768No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)