FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12171021
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC665510.5467988264912205No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT376400.30925918211791764No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG366860.30142089147656553No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA353490.2904357818460752No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC253230.20805978397375208No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC226730.18628675441444068No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA212970.17498121151873783No Hit
CAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAA206860.16996109036374188No Hit
AGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCC204780.16825211294927517No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG199560.1639632369379693No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT177830.14610935269933392No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC157310.1292496332066143No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC138320.11364699806203606No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT137320.11282537430508088No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT134180.11024547570824172No Hit
CAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAA130760.10743552245945512No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA124350.10216891417737263No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC122940.10101042468006587No Hit
CACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTATGGATGATTT122630.10075572131540977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)