FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12109362
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAA1189983598.2697106585797No Hit
GTGACA423720.34991108532390064No Hit
GTGAAC359750.29708418990199487No Hit
GTTAAA198030.16353462717523848No Hit
GTGCAA179760.14844712710710936No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)