FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12109362
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC672900.5556857578458717No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT379280.31321220721620185No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG364050.3006351614560701No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA354330.29260831412918364No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC251200.20744280334504825No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC223750.1847743919126375No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA212190.17522805908354214No Hit
CAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAA204160.16859682615814112No Hit
AGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCC202980.16762237349911582No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG197810.16335294956084392No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT175350.1448053167458368No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC158740.13108865685904839No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC138140.11407702569301338No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT137920.11389534807861884No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT134520.11108760312888491No Hit
CAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAA129560.10699159873162599No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA124990.10321765919624833No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC124470.10278823938040665No Hit
CACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTATGGATGATTT121730.10052552727385637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)