FastQCFastQC Report
Wed 11 May 2022
EGAF00004828816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12227093
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC677070.5537456859124242No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT380650.311316843668401No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG370730.30320371326201573No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA361630.2957612246835777No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC253370.20722014627679694No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC227780.1862912141095189No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA216910.17740112060978028No Hit
CAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAA207850.16999134626685183No Hit
AGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCC205250.16786492095872665No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG201890.16511692517591875No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT176340.14422070724415037No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC156860.12828887455096644No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC140260.11471246681447503No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT137850.11274143412502056No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT133790.10942093922079435No Hit
CAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAA131890.1078670130340875No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA126590.10353237682906313No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC125030.10225652164418803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)