FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13168886
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1290301997.98109726213744No Hit
AGTTAA367890.27936303799729145No Hit
AGACAA332600.2525650233436602No Hit
AGTCCA292120.22182590083929649No Hit
AGCCAA247060.1876088835456545No Hit
AGTCAC242150.18388039808378628No Hit
AGGCAA211760.16080327523527807No Hit
CGTCAA161890.12293370904721934No Hit
ATTCAA147610.11208996721514637No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)