FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13168886
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG513780.3901468962522722No Hit
CTCATCCACAATGATTTCTCCAGTGCTCATCTTGTTCTCGAGTTTTCTCT351270.2667423804868536No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT310330.23565394977221307No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG219370.16658204801833654No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC181770.13802989865657583No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT177740.1349696549882807No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC147970.11236333885797174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)