FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13111215
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1285139898.01836061722732No Hit
AGTTAA365220.2785554199210371No Hit
AGACAA330660.2521963067496033No Hit
AGTCCA279590.2132449204745708No Hit
AGCCAA246640.18811376367483867No Hit
AGTCAC227920.1738359107069787No Hit
AGGCAA215250.16417242795576154No Hit
ATTCAA150960.11513807072799889No Hit
CGTCAA146440.11169064041738314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)