FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13260218
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1298015997.88797589903876No Hit
AGTTAA413930.3121592721929609No Hit
AGACAA316990.23905338509517715No Hit
AGTCCA281600.2123645327701249No Hit
AGCCAA238330.17973309337749951No Hit
AGTCAC236390.17827007067304626No Hit
AGTAAA231350.1744692281831264No Hit
AGGCAA211400.159424226660527No Hit
CGTCAA152900.11530730490252875No Hit
ATTCAA145010.10935717648080899No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)