FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12548145
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCC1230166398.03570966067096No Hit
AGTTTC254710.2029861784351392No Hit
AGTTCT239890.19117566779790957No Hit
CGTTCC232040.18491976304067254No Hit
ATTTCC202160.1611074784360557No Hit
AGATCC195220.15557678047233278No Hit
AGCTCC187790.14965558654287148No Hit
AGTTCA178490.14224413249926582No Hit
AGTTAC165910.1322187462768401No Hit
AGGTCC164190.13084802574404422No Hit
GGTTCC130080.1036647249454003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)