FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12658097
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCC1238785697.86507403127025No Hit
AGTTTC255700.20200508812659598No Hit
AGTTCT240000.18960195991545964No Hit
CGTTCC237130.18733463647813728No Hit
ATTTCC196350.15511810345583543No Hit
AGATCC191090.1509626605010216No Hit
AGCTCC187710.14829243289887886No Hit
AGTTCA172500.13627640868923663No Hit
AGTTAC163820.1294191378056275No Hit
AGGTCC161370.1274836177981572No Hit
AGTACC160880.12709651379666312No Hit
AGTCCC150900.11921223229684524No Hit
GGTTCC132360.10456548089337599No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)