FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13774789
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1354021398.297062844302No Hit
CGACGT245550.17826044377158878No Hit
CGCTGT241400.17524769344924268No Hit
CGAAGT180010.13068076759651273No Hit
CGATGA151820.11021584432255188No Hit
CGAGGT150690.10939550507815402No Hit
CGATTT150010.1089018496036491No Hit
CTATGT146310.10621578305119592No Hit
TGATGT144810.10512683715155274No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)