FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13774789
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC269470.19562550105123205No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG240040.17426038250023285No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT230640.16743632152913557No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC202940.1473271205823915No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG201000.1459187505521863No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT185460.13463727103188294No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG181200.13154466467689632No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC147370.1069853048202771No Hit
CTCATCCACAATGATTTCTCCAGTGCTCATCTTGTTCTCGAGTTTTCTCT139100.10098158309357769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)