FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13851392
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1359465498.14648231744506No Hit
CGACGT308030.22238198153658492No Hit
CGAAGT290840.20997167649287524No Hit
CGCTGT239320.17277685881678895No Hit
CGAGGT231910.16742721597944812No Hit
CGATGA148990.1075631965364925No Hit
CGATTT148940.10752709908144972No Hit
CTATGT144280.10416281627146211No Hit
TGATGT144060.10400398746927383No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)