EGAF00004828843 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828843
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13851392
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC	27133	0.19588644953518028	No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	23871	0.172336469865267	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	23367	0.16869784639695418	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	20474	0.14781185890919846	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	20140	0.14540054891234036	No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT	18676	0.13483121407581272	No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG	18203	0.13141639482876524	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	14955	0.1079674880329717	No Hit
CTCATCCACAATGATTTCTCCAGTGCTCATCTTGTTCTCGAGTTTTCTCT	13894	0.1003076080728926	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	1465	41.368164	1
GCGATTT	6020	40.133457	94
ACCCGGC	6560	39.602955	5
TCGTAAG	1460	35.716736	6
GACCGTT	1735	34.117638	2
TAGCATA	7050	33.118366	9
ACCGTTG	1870	32.157055	3
CCAGTAG	7085	31.695263	5
GCGGGTC	8245	31.6805	2
CACCCGG	8585	30.261549	4
GTAGCAT	7825	30.138454	8
TCACCCG	8690	30.058195	3
CGCGGGT	9300	29.299433	1
GTCGTAA	1760	29.095121	5
CGGCCCG	9165	28.551197	8
CTTAGCG	2190	28.530483	8
CTCGATT	5650	27.70167	48-49
CGGGTCT	9485	27.39023	3
CGACCTA	2840	26.798037	4
AGTAGCA	8745	26.591753	7