FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14971621
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1471666998.2970982233654No Hit
TGACCC474340.31682608048921357No Hit
TGACAA339450.22672895606962No Hit
TGACTA264570.17671433173468656No Hit
TTACCA224770.15013070394982614No Hit
TGATCA198220.1323971532541466No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)