EGAF00004828852 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828852
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15064416
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	55312	0.3671698922812541	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	47913	0.31805414826568784	No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	39676	0.2633756263767544	No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC	16936	0.11242387358394776	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	16377	0.10871314228178511	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	15151	0.10057475842409026	No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	15141	0.10050837682655604	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCCGGC	11210	49.034866	5
CCAGTAG	11065	43.223618	5
CGACCGT	1740	42.931587	1
TCACCCG	13030	42.654377	3
GCGATTT	12020	42.62501	94
CACCCGG	13190	41.745296	4
TAGCATA	12030	40.653805	9
GTAGCAT	12545	38.53548	8
GCCAGTA	12760	37.776474	4
CGGCCCG	14845	37.43869	8
CAGTAGC	13570	35.48625	6
AGTAGCA	13675	35.07636	7
GACCGTT	2220	33.437008	2
GCGGGTC	12520	31.295727	2
ACCGTTG	2380	30.991743	3
CTCACCC	18210	30.598354	2
CTCGATT	11420	29.221872	48-49
TCGTAAG	1580	29.1397	6
CCGGCCC	20040	29.069668	7
CTTAGCG	2330	28.63179	8