FastQCFastQC Report
Wed 8 May 2024
EGAF00004828853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12279310
Total Bases73.6 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1205594698.18097270937862No Hit
CAGCTC327740.26690424787712014No Hit
CAGTTC253370.20633895552763143No Hit
CAGATA229270.18671244556900998No Hit
CAGATT227090.18493710151466167No Hit
TAGATC196870.16032659815575956No Hit
AAGATC124920.10173210058219884No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)