EGAF00004828855 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828855
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12279310
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	51437	0.418891615245482	No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC	16615	0.13530890579356658	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	15097	0.1229466476536548	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	13336	0.10860545095774926	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	13111	0.1067731004429402	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	12751	0.1038413396192457	No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG	12667	0.10315726209371699	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGGGTC	13075	42.92551	2
CGCGGGT	13335	42.33511	1
CGACCGT	1270	39.570297	1
CGGGTCT	14350	39.17703	3
GTCTGTC	16200	34.847923	6
GGTCTGT	16465	34.372635	5
GCGATTT	4395	33.482574	94
TGCAACC	16050	33.33501	94
GTCGTAA	1455	31.956535	5
ACCCGGC	4980	31.593878	5
TCGTAAG	1500	31.31095	6
GGGTCTG	18625	30.285585	4
CTTAGCG	1735	27.611383	8
GACCGTT	1795	27.473507	2
ACGACGT	1910	25.081545	7
TCTGTCT	23220	24.717041	7
TCACCCG	6475	24.58947	3
CCAGTAG	5100	24.496214	5
TACACGC	3245	24.46027	2
ACCGTTG	2020	24.413342	3