FastQCFastQC Report
Wed 8 May 2024
EGAF00004828856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12227545
Total Bases73.3 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1201429098.25594589919726No Hit
CAGCTC306370.2505572459557499No Hit
CAGTTC250210.20462815716482743No Hit
CAGATT218000.17828599281376598No Hit
CAGATA213960.17498197716712555No Hit
TAGATC191060.15625376966512902No Hit
CATATC123010.10060073383496032No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)