Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004828860 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12310509 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCGA | 2060 | 0.0 | 31.228786 | 4 |
CGTATCG | 2550 | 0.0 | 29.279163 | 3 |
CCCGTAT | 2725 | 0.0 | 27.24136 | 1 |
CCGTATC | 3055 | 0.0 | 26.436985 | 2 |
TATCGAA | 2780 | 0.0 | 23.816301 | 5 |
TCGACCG | 1505 | 0.0 | 18.408825 | 30-31 |
GTTCGAC | 1550 | 0.0 | 18.177368 | 28-29 |
CGTACGC | 635 | 0.0 | 17.747513 | 5 |
ATCGAAG | 4400 | 0.0 | 17.71551 | 6 |
CGATCCG | 1675 | 0.0 | 16.679625 | 82-83 |
CTCGAGT | 2375 | 0.0 | 15.627938 | 1 |
CCCGTCT | 3210 | 0.0 | 15.36818 | 1 |
CGCGTAT | 215 | 5.207859E-4 | 15.2967005 | 1 |
GTCCGTT | 1235 | 0.0 | 15.217077 | 1 |
CGCGATT | 315 | 2.7349652E-6 | 14.915151 | 1 |
CCGTACG | 760 | 0.0 | 14.828574 | 4 |
CGGCATG | 4155 | 0.0 | 14.691768 | 3 |
TAATGCG | 1945 | 0.0 | 14.484968 | 9 |
TTAACGC | 920 | 0.0 | 14.290785 | 7 |
ACGACTT | 2125 | 0.0 | 13.928995 | 1 |