FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14105683
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1391837098.67207422710406No Hit
ATAGTG227440.16123997682352567No Hit
ACAGTT170070.12056842621516449No Hit
ACCGTG153710.10897026397091159No Hit
ACAGCG150200.10648190520090378No Hit
CCAGTG141470.10029291031139718No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)